No. words: 1085; after pruning: 1059


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.9 (1,1:405)  388  0.00 0.25 0.00  MoSU004F_H07_CD454870Ld02P005E06E121F1_060.ab1        1   406 (132)  C MoSU004R_H07_CD454870Ld02P005E06E121R1_060.ab1   (140)   407     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C MoSU004R_H07_CD454870Ld02P005E06E121R1_060.ab1   547 
  295    MoSU004F_H07_CD454870Ld02P005E06E121F1_060.ab1   154 
  299  C MoSU004R_H07_CD454870Ld02P005E06E121R1_060.ab1   249 
  335    MoSU004F_H07_CD454870Ld02P005E06E121F1_060.ab1   194 
  347  C MoSU004R_H07_CD454870Ld02P005E06E121R1_060.ab1   201 
  355    MoSU004F_H07_CD454870Ld02P005E06E121F1_060.ab1   214 
  359  C MoSU004R_H07_CD454870Ld02P005E06E121R1_060.ab1   189 
  363    MoSU004F_H07_CD454870Ld02P005E06E121F1_060.ab1   222 
  367  C MoSU004R_H07_CD454870Ld02P005E06E121R1_060.ab1   181 
  371    MoSU004F_H07_CD454870Ld02P005E06E121F1_060.ab1   230 
  399  C MoSU004R_H07_CD454870Ld02P005E06E121R1_060.ab1   149 
  403    MoSU004F_H07_CD454870Ld02P005E06E121F1_060.ab1   262 
Contig length: old 679, new 679

Contig length: old 679, new 679
New start: 0