No. words: 1030; after pruning: 1004


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:369)  339  0.00 0.00 0.54  MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1        1   370 (117)  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1   (175)   368     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1   543 
  292    MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1   118 
  296  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1   248 
  304    MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1   130 
  308  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1   236 
  324    MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1   150 
  328  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1   216 
  368    MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1   194 
  432  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1   112 
  440    MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1   266 
  468  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1    76 
  472    MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1   298 
  508  C MoSU004R_A08_CD454870Ld03P005E06E121R1_053.ab1    36 
  512    MoSU004F_A08_CD454870Ld03P005E06E121F1_053.ab1   338 
Contig length: old 660, new 661

Contig length: old 661, new 661
New start: 0