No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.0 (1,1:397)  374  0.00 0.25 0.00  MoSU004F_D08_CD454870Ld06P005E06E121F1_062.ab1        5   398 (152)  C MoSU004R_D08_CD454870Ld06P005E06E121R1_062.ab1   (133)   395     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C MoSU004R_D08_CD454870Ld06P005E06E121R1_062.ab1   528 
  239    MoSU004F_D08_CD454870Ld06P005E06E121F1_062.ab1   109 
  243  C MoSU004R_D08_CD454870Ld06P005E06E121R1_062.ab1   286 
  299    MoSU004F_D08_CD454870Ld06P005E06E121F1_062.ab1   169 
  307  C MoSU004R_D08_CD454870Ld06P005E06E121R1_062.ab1   222 
  315    MoSU004F_D08_CD454870Ld06P005E06E121F1_062.ab1   185 
  327  C MoSU004R_D08_CD454870Ld06P005E06E121R1_062.ab1   202 
  367    MoSU004F_D08_CD454870Ld06P005E06E121F1_062.ab1   237 
Contig length: old 680, new 680

Contig length: old 680, new 680
New start: 0