No. words: 1089; after pruning: 1063


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.6 (1,1:394)  375  0.00 0.00 0.25  MoSU004F_F08_CD454870Ld08P005E06E121F1_063.ab1        1   395 (146)  C MoSU004R_F08_CD454870Ld08P005E06E121R1_063.ab1   (154)   394     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C MoSU004R_F08_CD454870Ld08P005E06E121R1_063.ab1   548 
  314    MoSU004F_F08_CD454870Ld08P005E06E121F1_063.ab1   160 
  322  C MoSU004R_F08_CD454870Ld08P005E06E121R1_063.ab1   227 
  370    MoSU004F_F08_CD454870Ld08P005E06E121F1_063.ab1   216 
  394  C MoSU004R_F08_CD454870Ld08P005E06E121R1_063.ab1   155 
  398    MoSU004F_F08_CD454870Ld08P005E06E121F1_063.ab1   244 
Contig length: old 694, new 695

Contig length: old 695, new 695
New start: 0