No. words: 1381; after pruning: 1355


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 12.9 (1,1:777)  591  0.17 0.00 0.00  UCD002F_H03_BE312718AS01P001B02B081F1_028.ab1       88   689 (1)  C UCD002R_H03_BE312718AS01P001B02B081R1_028.ab1   (0)   691    90 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  300 nodes

 152 str. conn. components

Path
    1    UCD002F_H03_BE312718AS01P001B02B081F1_028.ab1     1 
  383  C UCD002R_H03_BE312718AS01P001B02B081R1_028.ab1   396 
  431    UCD002F_H03_BE312718AS01P001B02B081F1_028.ab1   431 
  439  C UCD002R_H03_BE312718AS01P001B02B081R1_028.ab1   340 
Contig length: old 778, new 778

Contig length: old 778, new 778
New start: 0