No. words: 1253; after pruning: 1227


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.3 (1,1:770)  464  0.83 0.00 0.00  UCD002F_A04_BE312718AS02P001B02B081F1_021.ab1      178   659 (0)  C UCD002R_A04_BE312718AS02P001B02B081R1_021.ab1   (0)   594   113 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1    UCD002F_A04_BE312718AS02P001B02B081F1_021.ab1     1 
  377  C UCD002R_A04_BE312718AS02P001B02B081R1_021.ab1   395 
  389    UCD002F_A04_BE312718AS02P001B02B081F1_021.ab1   389 
  393  C UCD002R_A04_BE312718AS02P001B02B081R1_021.ab1   379 
  409    UCD002F_A04_BE312718AS02P001B02B081F1_021.ab1   409 
  429  C UCD002R_A04_BE312718AS02P001B02B081R1_021.ab1   343 
  433    UCD002F_A04_BE312718AS02P001B02B081F1_021.ab1   433 
  441  C UCD002R_A04_BE312718AS02P001B02B081R1_021.ab1   331 
  561    UCD002F_A04_BE312718AS02P001B02B081F1_021.ab1   561 
  569  C UCD002R_A04_BE312718AS02P001B02B081R1_021.ab1   203 
Contig length: old 771, new 771

Contig length: old 771, new 771
New start: 0