No. words: 1629; after pruning: 1603


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.5 (1,1:740)  736  0.00 0.00 0.00  UCD002F_D04_BE312718LD03P001B02B081F1_030.ab1        1   741 (43)  C UCD002R_D04_BE312718LD03P001B02B081R1_030.ab1   (104)   741     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1  C UCD002R_D04_BE312718LD03P001B02B081R1_030.ab1   845 
  108    UCD002F_D04_BE312718LD03P001B02B081F1_030.ab1     4 
  272  C UCD002R_D04_BE312718LD03P001B02B081R1_030.ab1   574 
  276    UCD002F_D04_BE312718LD03P001B02B081F1_030.ab1   172 
  444  C UCD002R_D04_BE312718LD03P001B02B081R1_030.ab1   402 
  452    UCD002F_D04_BE312718LD03P001B02B081F1_030.ab1   348 
  460  C UCD002R_D04_BE312718LD03P001B02B081R1_030.ab1   386 
  572    UCD002F_D04_BE312718LD03P001B02B081F1_030.ab1   468 
  580  C UCD002R_D04_BE312718LD03P001B02B081R1_030.ab1   266 
  816    UCD002F_D04_BE312718LD03P001B02B081F1_030.ab1   712 
  820  C UCD002R_D04_BE312718LD03P001B02B081R1_030.ab1    26 
  840    UCD002F_D04_BE312718LD03P001B02B081F1_030.ab1   736 
Contig length: old 888, new 888

Contig length: old 888, new 888
New start: 0