No. words: 1665; after pruning: 1639


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 16.6 (1,1:806)  780  0.25 0.37 0.00  UCD002F_E04_BE312718LD04P001B02B081F1_023.ab1        5   806 (41)  C UCD002R_E04_BE312718LD04P001B02B081R1_023.ab1   (13)   805     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C UCD002R_E04_BE312718LD04P001B02B081R1_023.ab1   818 
   44    UCD002F_E04_BE312718LD04P001B02B081F1_023.ab1    32 
  404  C UCD002R_E04_BE312718LD04P001B02B081R1_023.ab1   415 
  416    UCD002F_E04_BE312718LD04P001B02B081F1_023.ab1   404 
  424  C UCD002R_E04_BE312718LD04P001B02B081R1_023.ab1   395 
  776    UCD002F_E04_BE312718LD04P001B02B081F1_023.ab1   764 
  788  C UCD002R_E04_BE312718LD04P001B02B081R1_023.ab1    31 
  811    UCD002F_E04_BE312718LD04P001B02B081F1_023.ab1   799 
Contig length: old 858, new 859

Contig length: old 859, new 859
New start: 0