No. words: 1732; after pruning: 1706


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.5 (1,1:799)  787  0.00 0.25 0.00  UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1        1   799 (52)  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   (80)   801     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  394 nodes

 199 str. conn. components

Path
    1  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   881 
  105    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1    23 
  469  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   413 
  477    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   395 
  497  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   385 
  517    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   435 
  521  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   361 
  585    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   503 
  589  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   293 
  677    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   595 
  689  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   193 
  693    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   611 
  697  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   185 
  733    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   651 
  737  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1   145 
  825    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   743 
  829  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1    53 
  837    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   755 
  853  C UCD002R_F04_BE312718LD05P001B02B081R1_031.ab1    29 
  873    UCD002F_F04_BE312718LD05P001B02B081F1_031.ab1   791 
Contig length: old 932, new 933

Contig length: old 933, new 933
New start: 0