No. words: 1615; after pruning: 1589


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.1 (1,1:799)  771  0.26 0.00 0.00  UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1       19   800 (33)  C UCD002R_H04_BE312718LD07P001B02B081R1_032.ab1   (0)   782     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  384 nodes

 194 str. conn. components

Path
    1    UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1     1 
  386  C UCD002R_H04_BE312718LD07P001B02B081R1_032.ab1   415 
  394    UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1   394 
  406  C UCD002R_H04_BE312718LD07P001B02B081R1_032.ab1   395 
  450    UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1   450 
  462  C UCD002R_H04_BE312718LD07P001B02B081R1_032.ab1   339 
  514    UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1   514 
  526  C UCD002R_H04_BE312718LD07P001B02B081R1_032.ab1   275 
  610    UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1   610 
  614  C UCD002R_H04_BE312718LD07P001B02B081R1_032.ab1   187 
  758    UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1   758 
  773  C UCD002R_H04_BE312718LD07P001B02B081R1_032.ab1    28 
  791    UCD002F_H04_BE312718LD07P001B02B081F1_032.ab1   791 
Contig length: old 833, new 833

Contig length: old 833, new 833
New start: 0