No. words: 1661; after pruning: 1621


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 16.6 (1,1:793)  775  0.00 0.13 0.00  UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1       11   794 (78)  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   (4)   785     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  388 nodes

 196 str. conn. components

Path
    1    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1     1 
   17  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   779 
   29    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1    29 
  233  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   563 
  237    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   237 
  289  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   507 
  297    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   297 
  309  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   487 
  313    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   313 
  349  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   447 
  353    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   353 
  393  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   403 
  397    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   397 
  413  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   383 
  421    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   421 
  433  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   363 
  437    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   437 
  441  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   355 
  449    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   449 
  494  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   301 
  522    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   522 
  530  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   265 
  578    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   578 
  582  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   213 
  590    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   590 
  598  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   197 
  606    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   606 
  618  C UCD002R_A05_BE312718LD08P001B02B081R1_033.ab1   177 
  790    UCD002F_A05_BE312718LD08P001B02B081F1_033.ab1   790 
Contig length: old 872, new 872

Contig length: old 872, new 872
New start: 0