No. words: 1665; after pruning: 1639


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.2 (1,1:799)  775  0.13 0.50 0.00  UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1        3   799 (65)  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   (0)   801     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   801 
   14    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1    15 
   18  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   784 
   27    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1    27 
   39  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   763 
   51    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1    49 
  331  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   471 
  335    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   333 
  343  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   459 
  351    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   349 
  387  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   415 
  399    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   397 
  407  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   395 
  419    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   417 
  427  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   375 
  435    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   433 
  463  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   339 
  499    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   497 
  503  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   299 
  651    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   649 
  655  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1   147 
  763    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   761 
  771  C UCD002R_B05_BE312718LD09P001B02B081R1_041.ab1    31 
  794    UCD002F_B05_BE312718LD09P001B02B081F1_041.ab1   792 
Contig length: old 865, new 866

Contig length: old 866, new 866
New start: 0