No. words: 1668; after pruning: 1642


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 16.7 (1,1:802)  774  0.13 0.38 0.00  UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1       13   803 (67)  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   (4)   794     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  386 nodes

 195 str. conn. components

Path
    1    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1     1 
   19  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   788 
   32    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1    31 
   44  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   763 
   56    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1    53 
  312  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   495 
  320    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   317 
  332  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   475 
  340    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   337 
  352  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   455 
  356    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   353 
  392  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   415 
  400    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   397 
  412  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   395 
  420    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   417 
  432  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   375 
  440    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   437 
  464  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   343 
  472    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   469 
  484  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   323 
  500    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   497 
  512  C UCD002R_E05_BE312718LD12P001B02B081R1_035.ab1   295 
  797    UCD002F_E05_BE312718LD12P001B02B081F1_035.ab1   794 
Contig length: old 870, new 873

Contig length: old 873, new 873
New start: 0