No. words: 1562; after pruning: 1536


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 14.5 (1,1:791)  742  0.00 0.52 0.00  UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1       13   774 (0)  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   (4)   784    19 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  372 nodes

 188 str. conn. components

Path
    1    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1     1 
   42  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   753 
   54    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1    52 
  350  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   445 
  354    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1   352 
  390  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   405 
  398    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1   396 
  410  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   385 
  438    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1   436 
  442  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   353 
  462    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1   460 
  466  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   329 
  614    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1   612 
  618  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1   177 
  746    UCD002F_F05_BE312718LD13P001B02B081F1_043.ab1   744 
  750  C UCD002R_F05_BE312718LD13P001B02B081R1_043.ab1    45 
Contig length: old 792, new 794

Contig length: old 794, new 796
New start: 0 
I Change at: 20; seg lengths: entry 1, contig 0
I Change at: 29; seg lengths: entry 1, contig 0