No. words: 1039; after pruning: 1013


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.6 (1,1:360)  349  0.00 0.56 0.00  UCD005F_A01_BE398302LD02P012D02D081F1_015.ab1        1   358 (131)  C UCD005R_A01_BE398302LD02P012D02D081R1_015.ab1   (188)   362     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  174 nodes

 89 str. conn. components

Path
    1  C UCD005R_A01_BE398302LD02P012D02D081R1_015.ab1   550 
  393    UCD005F_A01_BE398302LD02P012D02D081F1_015.ab1   203 
  409  C UCD005R_A01_BE398302LD02P012D02D081R1_015.ab1   142 
  449    UCD005F_A01_BE398302LD02P012D02D081F1_015.ab1   259 
  465  C UCD005R_A01_BE398302LD02P012D02D081R1_015.ab1    86 
  497    UCD005F_A01_BE398302LD02P012D02D081F1_015.ab1   307 
Contig length: old 678, new 679

Contig length: old 679, new 679
New start: 0