No. words: 692; after pruning: 666


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 2.1 (1,1:356)  195  1.84 0.46 0.46  UCD005F_D01_BE398302LD05P012D02D081F1_009.ab1      139   355 (118)  C UCD005R_D01_BE398302LD05P012D02D081R1_009.ab1   (0)   219     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1    UCD005F_D01_BE398302LD05P012D02D081F1_009.ab1     1 
Contig length: old 473, new 473

Contig length: old 473, new 473
New start: 0