No. words: 1021; after pruning: 995


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.3 (1,1:356)  351  0.00 0.00 0.00  UCD005F_F01_BE398302LD07P012D02D081F1_005.ab1        5   356 (117)  C UCD005R_F01_BE398302LD07P012D02D081R1_005.ab1   (195)   353     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  178 nodes

 91 str. conn. components

Path
    1  C UCD005R_F01_BE398302LD07P012D02D081R1_005.ab1   548 
  427    UCD005F_F01_BE398302LD07P012D02D081F1_005.ab1   236 
Contig length: old 664, new 664

Contig length: old 664, new 664
New start: 0