No. words: 1012; after pruning: 960


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    2    0.0 1.5 (1,1:264)  111  4.62 0.00 0.00  UCD011F_F01_BE398302Sn24P025F03P012D081F1_005.ab1        3   132 (0)  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1   (14)   263   134 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.2 (2,1:257)  261  0.37 0.37 0.00  UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1        9   277 (0)    UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1        1   270 (38) *
Merge:(0)    8    0.0 2.4 (3,1:4)  248  0.00 0.00 0.00  UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1        2   250 (58)  C UCD021F_H01_BE398302Sn24P025F03P012D081F2_001.ab1   (42)   253     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 8       1        0

Offset
  0       4 
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  526 nodes

 100 str. conn. components

Path
    1  C UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1   308 
   92    UCD021F_H01_BE398302Sn24P025F03P012D081F2_001.ab1    38 
   94  C UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1   215 
  129    UCD021F_H01_BE398302Sn24P025F03P012D081F2_001.ab1    75 
  133  C UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1   176 
  159  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1   157 
  162  C UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1   147 
  167  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1   149 
  178  C UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1   131 
  182  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1   134 
  218  C UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1    91 
  222  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1    94 
  238  C UCD021R_H01_BE398302Sn24P025F03P012D081R2_001.ab1    71 
  246  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1    70 
  250    UCD021F_H01_BE398302Sn24P025F03P012D081F2_001.ab1   196 
  254  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1    62 
  274    UCD021F_H01_BE398302Sn24P025F03P012D081F2_001.ab1   220 
  282  C UCD011R_F01_BE398302Sn24P025F03P012D081R1_005.ab1    34 
  286    UCD021F_H01_BE398302Sn24P025F03P012D081F2_001.ab1   232 
Contig length: old 349, new 349

Contig length: old 349, new 349
New start: 0