No. words: 1001; after pruning: 949


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 5.3 (1,1:0)  275  0.00 0.00 0.36  UCD010R_A12_BE398302Ta11P025F03P012D081R1_096.ab1        1   281 (3)    UCD020R_A12_BE398302Ta11P025F03P012D081R2_096.ab1        1   280 (14) *
Merge:(0)    4    0.0 1.6 (2,1:251)  193  1.63 0.00 3.27  UCD020R_A12_BE398302Ta11P025F03P012D081R2_096.ab1        3   247 (47)  C UCD020F_A12_BE398302Ta11P025F03P012D081F2_096.ab1   (30)   244     8 *

Pass: 3
#reads  #contigs (not counting singlets)
    1      1
    3      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 3       1        0
 4       1        0

Offset
  0       1 
  1       2 

Pass 4
             Gap  Score    
Merge:(0)    0   -0.9 -0.3 (3,1:74)  114  6.76 0.68 0.00  UCD020R_A12_BE398302Ta11P025F03P012D081R2_096.ab1       76   223 (71)    UCD010F_A12_BE398302Ta11P025F03P012D081F1_096.ab1        1   149 (0) *

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.9       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       2 
  1       1 

Read equivalence class histogram:
    1    1
    3    1

Chimera merges: 


Contig 1:  430 nodes

 144 str. conn. components

Path
    1  C UCD020F_A12_BE398302Ta11P025F03P012D081F2_096.ab1   274 
   34    UCD010R_A12_BE398302Ta11P025F03P012D081R1_096.ab1     6 
   36  C UCD020F_A12_BE398302Ta11P025F03P012D081F2_096.ab1   239 
   40    UCD010R_A12_BE398302Ta11P025F03P012D081R1_096.ab1    12 
   72    UCD020R_A12_BE398302Ta11P025F03P012D081R2_096.ab1    44 
  123    UCD010R_A12_BE398302Ta11P025F03P012D081R1_096.ab1    96 
  151    UCD020R_A12_BE398302Ta11P025F03P012D081R2_096.ab1   123 
Contig length: old 316, new 322

Contig length: old 322, new 322
New start: 0