No. words: 1081; after pruning: 1029


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    
Merge:(0)    0    0.0 3.2 (1,1:251)  207  4.56 0.00 0.00  UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1       12   252 (10)  C UCD010F_E12_BE398302Ta15P025F03P012D081F1_088.ab1   (0)   241     1 *

Pass: 1
#reads  #contigs (not counting singlets)
    1      2
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.7 (2,1:0)  258  0.38 0.00 0.00  UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1        1   262 (0)    UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1        1   262 (35) *
Merge:(0)    3    0.0 4.6 (3,1:251)  242  0.80 0.00 0.00  UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1        4   252 (45)  C UCD020F_E12_BE398302Ta15P025F03P012D081F2_088.ab1   (32)   249     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       1        0
 3       1        0

Offset
  0       5 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    4      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    4    1

Chimera merges: 


Contig 1:  638 nodes

 161 str. conn. components

Path
    1  C UCD020F_E12_BE398302Ta15P025F03P012D081F2_088.ab1   281 
   36    UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1     7 
   37    UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1     8 
   39  C UCD020F_E12_BE398302Ta15P025F03P012D081F2_088.ab1   243 
   43    UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1    14 
   49    UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1    20 
   61  C UCD020F_E12_BE398302Ta15P025F03P012D081F2_088.ab1   221 
   64    UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1    35 
   65    UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1    36 
   92    UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1    63 
  117    UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1    88 
  133    UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1   104 
  157    UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1   128 
  173    UCD010R_E12_BE398302Ta15P025F03P012D081R1_088.ab1   144 
  174    UCD020R_E12_BE398302Ta15P025F03P012D081R2_088.ab1   145 
Contig length: old 326, new 326

Contig length: old 326, new 326
New start: 0