No. words: 1296; after pruning: 1270


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.8 (1,1:701)  494  4.88 0.00 0.00  UCD017F_D01_BE399200AS02P028D01D071F1_009.ab1       99   692 (0)  C UCD017R_D01_BE399200AS02P028D01D071R1_009.ab1   (0)   604    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1    UCD017F_D01_BE399200AS02P028D01D071F1_009.ab1     1 
  186  C UCD017R_D01_BE399200AS02P028D01D071R1_009.ab1   517 
  194    UCD017F_D01_BE399200AS02P028D01D071F1_009.ab1   194 
  254  C UCD017R_D01_BE399200AS02P028D01D071R1_009.ab1   449 
  262    UCD017F_D01_BE399200AS02P028D01D071F1_009.ab1   262 
  551  C UCD017R_D01_BE399200AS02P028D01D071R1_009.ab1   152 
  563    UCD017F_D01_BE399200AS02P028D01D071F1_009.ab1   563 
  591  C UCD017R_D01_BE399200AS02P028D01D071R1_009.ab1   112 
Contig length: old 702, new 702

Contig length: old 702, new 702
New start: 0