No. words: 1670; after pruning: 1644


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:944)  706  0.00 0.00 0.00  UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1      115   839 (0)  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   (0)   831   107 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1     1 
  202  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   744 
  206    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   206 
  214  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   732 
  218    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   218 
  230  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   716 
  234    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   234 
  258  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   688 
  266    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   266 
  278  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   668 
  282    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   282 
  306  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   640 
  314    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   314 
  350  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   596 
  354    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   354 
  378  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   568 
  382    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   382 
  490  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   456 
  494    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   494 
  538  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   408 
  542    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   542 
  574  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   372 
  578    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   578 
  582  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   364 
  594    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   594 
  606  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   340 
  618    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   618 
  622  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   324 
  642    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   642 
  646  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   300 
  678    UCD017F_E01_BE399200AT01P028D01D071F1_007.ab1   678 
  682  C UCD017R_E01_BE399200AT01P028D01D071R1_007.ab1   264 
Contig length: old 945, new 945

Contig length: old 945, new 945
New start: 0