No. words: 1618; after pruning: 1592


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.0 (1,1:942)  656  0.00 0.00 0.00  UCD017F_G01_BE399200LD01P028D01D071F1_003.ab1      154   828 (0)  C UCD017R_G01_BE399200LD01P028D01D071R1_003.ab1   (0)   790   116 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  338 nodes

 171 str. conn. components

Path
    1    UCD017F_G01_BE399200LD01P028D01D071F1_003.ab1     1 
  390  C UCD017R_G01_BE399200LD01P028D01D071R1_003.ab1   554 
  414    UCD017F_G01_BE399200LD01P028D01D071F1_003.ab1   414 
  598  C UCD017R_G01_BE399200LD01P028D01D071R1_003.ab1   346 
Contig length: old 943, new 943

Contig length: old 943, new 943
New start: 0