No. words: 1644; after pruning: 1618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.0 (1,1:977)  631  0.90 0.00 0.00  UCD017F_H01_BE399200LD02P028D01D071F1_001.ab1      267   932 (0)  C UCD017R_H01_BE399200LD02P028D01D071R1_001.ab1   (0)   712    47 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1    UCD017F_H01_BE399200LD02P028D01D071F1_001.ab1     1 
  549  C UCD017R_H01_BE399200LD02P028D01D071R1_001.ab1   430 
  557    UCD017F_H01_BE399200LD02P028D01D071F1_001.ab1   557 
  609  C UCD017R_H01_BE399200LD02P028D01D071R1_001.ab1   370 
Contig length: old 978, new 978

Contig length: old 978, new 978
New start: 0