No. words: 1751; after pruning: 1725


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.9 (1,1:988)  741  0.00 0.00 0.00  UCD017F_E02_BE399200LD07P028D01D071F1_008.ab1      123   884 (0)  C UCD017R_E02_BE399200LD07P028D01D071R1_008.ab1   (0)   867   106 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  382 nodes

 193 str. conn. components

Path
    1    UCD017F_E02_BE399200LD07P028D01D071F1_008.ab1     1 
  346  C UCD017R_E02_BE399200LD07P028D01D071R1_008.ab1   644 
  358    UCD017F_E02_BE399200LD07P028D01D071F1_008.ab1   358 
  434  C UCD017R_E02_BE399200LD07P028D01D071R1_008.ab1   556 
  554    UCD017F_E02_BE399200LD07P028D01D071F1_008.ab1   554 
  558  C UCD017R_E02_BE399200LD07P028D01D071R1_008.ab1   432 
Contig length: old 989, new 989

Contig length: old 989, new 989
New start: 0