No. words: 1787; after pruning: 1761


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.8 (1,1:981)  779  0.12 0.00 0.00  UCD017F_A03_BE399200LD11P028D01D071F1_031.ab1      114   918 (0)  C UCD017R_A03_BE399200LD11P028D01D071R1_031.ab1   (0)   869    65 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1    UCD017F_A03_BE399200LD11P028D01D071F1_031.ab1     1 
  337  C UCD017R_A03_BE399200LD11P028D01D071R1_031.ab1   646 
  349    UCD017F_A03_BE399200LD11P028D01D071F1_031.ab1   349 
  353  C UCD017R_A03_BE399200LD11P028D01D071R1_031.ab1   630 
Contig length: old 982, new 982

Contig length: old 982, new 982
New start: 0