No. words: 1653; after pruning: 1627


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.5 (1,1:988)  642  0.30 0.00 0.00  UCD017F_B03_BE399200LD12P028D01D071F1_029.ab1      196   859 (0)  C UCD017R_B03_BE399200LD12P028D01D071R1_029.ab1   (0)   794   131 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  326 nodes

 165 str. conn. components

Path
    1    UCD017F_B03_BE399200LD12P028D01D071F1_029.ab1     1 
  479  C UCD017R_B03_BE399200LD12P028D01D071R1_029.ab1   511 
  503    UCD017F_B03_BE399200LD12P028D01D071F1_029.ab1   503 
  527  C UCD017R_B03_BE399200LD12P028D01D071R1_029.ab1   463 
Contig length: old 989, new 989

Contig length: old 989, new 989
New start: 0