No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.3 (1,1:430)  417  0.00 0.00 0.00  UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1        1   428 (74)  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1   (69)   431     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1   500 
  133    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1    64 
  141  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1   360 
  169    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   100 
  189  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1   312 
  197    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   128 
  201  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1   300 
  221    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   152 
  313  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1   188 
  389    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   320 
  413  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1    88 
  417    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   348 
  429  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1    72 
  433    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   364 
  437  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1    64 
  445    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   376 
  449  C UCD032R_D11_BE399200Sn24P036H09P028D071R1_089.ab1    52 
  453    UCD032F_D11_BE399200Sn24P036H09P028D071F1_089.ab1   384 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0