No. words: 1001; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.2 (1,1:429)  412  0.00 0.23 0.00  UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1        1   427 (74)  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1   (69)   431     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1   500 
  193    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   123 
  201  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1   300 
  245    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   175 
  285  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1   216 
  329    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   259 
  333  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1   168 
  385    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   315 
  393  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1   108 
  409    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   339 
  413  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1    88 
  417    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   347 
  437  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1    64 
  449    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   379 
  453  C UCD032R_F11_BE399200Sn30P036H09P028D071R1_085.ab1    48 
  465    UCD032F_F11_BE399200Sn30P036H09P028D071F1_085.ab1   395 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0