No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 7.8 (1,1:430)  409  0.23 0.00 0.23  UCD032F_G11_BE399200Sn31P036H09P028D071F1_083.ab1        1   428 (74)  C UCD032R_G11_BE399200Sn31P036H09P028D071R1_083.ab1   (70)   430     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCD032R_G11_BE399200Sn31P036H09P028D071R1_083.ab1   500 
  201    UCD032F_G11_BE399200Sn31P036H09P028D071F1_083.ab1   132 
  433  C UCD032R_G11_BE399200Sn31P036H09P028D071R1_083.ab1    68 
  441    UCD032F_G11_BE399200Sn31P036H09P028D071F1_083.ab1   372 
  461  C UCD032R_G11_BE399200Sn31P036H09P028D071R1_083.ab1    40 
  465    UCD032F_G11_BE399200Sn31P036H09P028D071F1_083.ab1   396 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0