No. words: 989; after pruning: 963


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 8.3 (1,1:429)  417  0.00 0.00 0.00  UCD032F_H11_BE399200Sn32P036H09P028D071F1_081.ab1        1   428 (62)  C UCD032R_H11_BE399200Sn32P036H09P028D071R1_081.ab1   (69)   430     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD032R_H11_BE399200Sn32P036H09P028D071R1_081.ab1   499 
  117    UCD032F_H11_BE399200Sn32P036H09P028D071F1_081.ab1    48 
  125  C UCD032R_H11_BE399200Sn32P036H09P028D071R1_081.ab1   375 
  169    UCD032F_H11_BE399200Sn32P036H09P028D071F1_081.ab1   100 
  321  C UCD032R_H11_BE399200Sn32P036H09P028D071R1_081.ab1   179 
  325    UCD032F_H11_BE399200Sn32P036H09P028D071F1_081.ab1   256 
  425  C UCD032R_H11_BE399200Sn32P036H09P028D071R1_081.ab1    75 
  433    UCD032F_H11_BE399200Sn32P036H09P028D071F1_081.ab1   364 
  437  C UCD032R_H11_BE399200Sn32P036H09P028D071R1_081.ab1    63 
  441    UCD032F_H11_BE399200Sn32P036H09P028D071F1_081.ab1   372 
  461  C UCD032R_H11_BE399200Sn32P036H09P028D071R1_081.ab1    39 
  465    UCD032F_H11_BE399200Sn32P036H09P028D071F1_081.ab1   396 
Contig length: old 559, new 559

Contig length: old 559, new 559
New start: 0