No. words: 1788; after pruning: 1762


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 17.2 (1,1:942)  806  0.47 0.00 0.12  UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1       17   861 (1)  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   (0)   926    83 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  410 nodes

 207 str. conn. components

Path
    1    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1     1 
  193  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   751 
  197    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   197 
  233  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   711 
  237    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   237 
  249  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   695 
  253    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   253 
  261  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   683 
  269    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   269 
  321  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   623 
  677    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   677 
  689  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   255 
  697    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   697 
  721  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   223 
  725    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   725 
  733  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   211 
  737    UCD017F_A01_BE399200TU01P028D01D071F1_015.ab1   737 
  745  C UCD017R_A01_BE399200TU01P028D01D071R1_015.ab1   199 
Contig length: old 943, new 943

Contig length: old 943, new 943
New start: 0