No. words: 1756; after pruning: 1730


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.3 (1,1:947)  783  0.00 0.00 0.12  UCD017F_B01_BE399200TU02P028D01D071F1_013.ab1       61   868 (0)  C UCD017R_B01_BE399200TU02P028D01D071R1_013.ab1   (0)   888    82 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  402 nodes

 203 str. conn. components

Path
    1    UCD017F_B01_BE399200TU02P028D01D071F1_013.ab1     1 
  405  C UCD017R_B01_BE399200TU02P028D01D071R1_013.ab1   545 
  697    UCD017F_B01_BE399200TU02P028D01D071F1_013.ab1   697 
  705  C UCD017R_B01_BE399200TU02P028D01D071R1_013.ab1   245 
  713    UCD017F_B01_BE399200TU02P028D01D071F1_013.ab1   713 
  721  C UCD017R_B01_BE399200TU02P028D01D071R1_013.ab1   229 
Contig length: old 948, new 949

Contig length: old 949, new 949
New start: 0