No. words: 1018; after pruning: 992


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 4.8 (1,1:447)  415  0.90 0.00 0.23  UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1        1   443 (58)  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   (70)   447     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   517 
  134    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1    64 
  138  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   380 
  166    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1    96 
  174  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   344 
  178    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1   108 
  186  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   332 
  210    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1   140 
  214  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   304 
  222    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1   152 
  226  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   292 
  370    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1   300 
  374  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   144 
  406    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1   336 
  410  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1   108 
  474    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1   404 
  478  C UCD032R_G09_BE399200Ta11P036H09P028D071R1_067.ab1    40 
  494    UCD032F_G09_BE399200Ta11P036H09P028D071F1_067.ab1   424 
Contig length: old 570, new 571

Contig length: old 571, new 571
New start: 0