No. words: 1332; after pruning: 1306


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:741)  551  1.53 0.00 0.00  UCD034F_D07_BE399200Ta12P028D01P036G091F1_057.ab1      149   738 (0)  C UCD034R_D07_BE399200Ta12P028D01P036G091R1_057.ab1   (0)   594     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1    UCD034F_D07_BE399200Ta12P028D01P036G091F1_057.ab1     1 
  176  C UCD034R_D07_BE399200Ta12P028D01P036G091R1_057.ab1   567 
  200    UCD034F_D07_BE399200Ta12P028D01P036G091F1_057.ab1   200 
  204  C UCD034R_D07_BE399200Ta12P028D01P036G091R1_057.ab1   539 
  212    UCD034F_D07_BE399200Ta12P028D01P036G091F1_057.ab1   212 
  216  C UCD034R_D07_BE399200Ta12P028D01P036G091R1_057.ab1   527 
  224    UCD034F_D07_BE399200Ta12P028D01P036G091F1_057.ab1   224 
  237  C UCD034R_D07_BE399200Ta12P028D01P036G091R1_057.ab1   506 
  245    UCD034F_D07_BE399200Ta12P028D01P036G091F1_057.ab1   245 
  249  C UCD034R_D07_BE399200Ta12P028D01P036G091R1_057.ab1   494 
Contig length: old 742, new 742

Contig length: old 742, new 742
New start: 0 
S Change at: 233; seg lengths: entry 1, contig 1