No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   11    0.0 4.1 (1,1:445)  396  1.61 0.23 0.23  UCD032F_H09_BE399200Ta12P036H09P028D071F1_065.ab1        1   435 (53)  C UCD032R_H09_BE399200Ta12P036H09P028D071R1_065.ab1   (69)   446    12 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
11       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  202 nodes

 103 str. conn. components

Path
    1  C UCD032R_H09_BE399200Ta12P036H09P028D071R1_065.ab1   515 
  193    UCD032F_H09_BE399200Ta12P036H09P028D071F1_065.ab1   123 
  197  C UCD032R_H09_BE399200Ta12P036H09P028D071R1_065.ab1   319 
  485    UCD032F_H09_BE399200Ta12P036H09P028D071F1_065.ab1   415 
  489  C UCD032R_H09_BE399200Ta12P036H09P028D071R1_065.ab1    27 
  493    UCD032F_H09_BE399200Ta12P036H09P028D071F1_065.ab1   423 
Contig length: old 557, new 558

Contig length: old 558, new 558
New start: 0