No. words: 1001; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.3 (1,1:429)  416  0.00 0.00 0.00  UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1        1   427 (74)  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1   (70)   430     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1   500 
  130    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1    60 
  154  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1   347 
  182    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   112 
  194  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1   307 
  210    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   140 
  218  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1   283 
  382    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   312 
  394  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1   107 
  402    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   332 
  410  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1    91 
  418    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   348 
  426  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1    75 
  430    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   360 
  438  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1    63 
  442    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   372 
  450  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1    51 
  454    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   384 
  458  C UCD032R_A10_BE399200Ta13P036H09P028D071R1_080.ab1    43 
  474    UCD032F_A10_BE399200Ta13P036H09P028D071F1_080.ab1   404 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0