No. words: 1001; after pruning: 975


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.3 (1,1:429)  416  0.00 0.00 0.00  UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1        1   427 (74)  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1   (70)   430     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1   500 
   94    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1    24 
   98  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1   403 
  166    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1    96 
  206  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1   295 
  218    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1   148 
  302  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1   199 
  310    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1   240 
  314  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1   187 
  330    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1   260 
  410  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1    91 
  414    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1   344 
  426  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1    75 
  446    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1   376 
  458  C UCD032R_B10_BE399200Ta14P036H09P028D071R1_078.ab1    43 
  466    UCD032F_B10_BE399200Ta14P036H09P028D071F1_078.ab1   396 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0