No. words: 1031; after pruning: 1005


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 3.7 (1,1:749)  240  3.57 0.00 0.00  UCD034F_A08_BE399200Ta17P028D01P036G091F1_064.ab1      212   491 (0)  C UCD034R_A08_BE399200Ta17P028D01P036G091R1_064.ab1   (1)   539   260 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  114 nodes

 59 str. conn. components

Path
    1    UCD034F_A08_BE399200Ta17P028D01P036G091F1_064.ab1     1 
  222  C UCD034R_A08_BE399200Ta17P028D01P036G091R1_064.ab1   529 
  226    UCD034F_A08_BE399200Ta17P028D01P036G091F1_064.ab1   226 
  240  C UCD034R_A08_BE399200Ta17P028D01P036G091R1_064.ab1   511 
  244    UCD034F_A08_BE399200Ta17P028D01P036G091F1_064.ab1   244 
  256  C UCD034R_A08_BE399200Ta17P028D01P036G091R1_064.ab1   495 
  273    UCD034F_A08_BE399200Ta17P028D01P036G091F1_064.ab1   273 
  281  C UCD034R_A08_BE399200Ta17P028D01P036G091R1_064.ab1   470 
  426    UCD034F_A08_BE399200Ta17P028D01P036G091F1_064.ab1   426 
  430  C UCD034R_A08_BE399200Ta17P028D01P036G091R1_064.ab1   321 
Contig length: old 750, new 750

Contig length: old 750, new 750
New start: 0 
S Change at: 216; seg lengths: entry 3, contig 3