No. words: 1008; after pruning: 982


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 6.0 (1,1:437)  420  0.00 0.00 0.23  UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1        1   435 (66)  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1   (70)   437     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1   507 
  170    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   100 
  194  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1   314 
  210    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   140 
  214  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1   294 
  222    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   152 
  242  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1   266 
  270    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   200 
  278  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1   230 
  406    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   336 
  410  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1    98 
  418    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   348 
  426  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1    82 
  446    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   376 
  450  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1    58 
  466    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   396 
  486  C UCD032R_E10_BE399200Ta17P036H09P028D071R1_072.ab1    22 
  494    UCD032F_E10_BE399200Ta17P036H09P028D071F1_072.ab1   424 
Contig length: old 570, new 571

Contig length: old 571, new 571
New start: 0