No. words: 1071; after pruning: 1045


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    6   -3.6 -3.6 (1,1:750)  204 10.22 0.32 0.00  UCD034F_B08_BE399200Ta18P028D01P036G091F1_062.ab1      161   473 (0)  C UCD034R_B08_BE399200Ta18P028D01P036G091R1_062.ab1   (6)   592   279 *
  Worst pair: offset 0 
LLR breakdown: discreps: -9.7 (<20 part: -9.7 (#=33), >20:0.0 (#=0); in HQ: -9.7, out HQ 0.0), match: 6.3  lead: -0.2  total: -3.6  204 10.22 0.32 0.00  UCD034F_B08_BE399200Ta18P028D01P036G091F1_062.ab1      161   473 (0)  C UCD034R_B08_BE399200Ta18P028D01P036G091R1_062.ab1   (6)   592   279 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.6       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  78 nodes

 41 str. conn. components

Path
    1    UCD034F_B08_BE399200Ta18P028D01P036G091F1_062.ab1     1 
  174  C UCD034R_B08_BE399200Ta18P028D01P036G091R1_062.ab1   579 
  184    UCD034F_B08_BE399200Ta18P028D01P036G091F1_062.ab1   183 
  238  C UCD034R_B08_BE399200Ta18P028D01P036G091R1_062.ab1   515 
Contig length: old 751, new 752

Contig length: old 752, new 752
New start: 0 
S Change at: 170; seg lengths: entry 1, contig 1
S Change at: 195; seg lengths: entry 1, contig 1
S Change at: 218; seg lengths: entry 3, contig 3