No. words: 969; after pruning: 943


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -4.0 -4.0 (1,1:738)  117 15.28 0.00 0.00  UCD034F_C08_BE399200Ta19P028D01P036G091F1_060.ab1      231   459 (0)  C UCD034R_C08_BE399200Ta19P028D01P036G091R1_060.ab1   (1)   509   281 *
  Worst pair: offset 0 
LLR breakdown: discreps: -8.0 (<20 part: -8.0 (#=35), >20:0.0 (#=0); in HQ: -8.0, out HQ 0.0), match: 4.3  lead: -0.4  total: -4.1  117 15.28 0.00 0.00  UCD034F_C08_BE399200Ta19P028D01P036G091F1_060.ab1      231   459 (0)  C UCD034R_C08_BE399200Ta19P028D01P036G091R1_060.ab1   (1)   509   281 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  46 nodes

 25 str. conn. components

Path
    1    UCD034F_C08_BE399200Ta19P028D01P036G091F1_060.ab1     1 
  242  C UCD034R_C08_BE399200Ta19P028D01P036G091R1_060.ab1   498 
Contig length: old 739, new 739

Contig length: old 739, new 740
New start: 0 
S Change at: 238; seg lengths: entry 1, contig 1
S Change at: 253; seg lengths: entry 1, contig 1
I Change at: 320; seg lengths: entry 5, contig 4