No. words: 1002; after pruning: 976


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.2 (1,1:430)  413  0.00 0.23 0.00  UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1        1   428 (74)  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1   (68)   432     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1   500 
  129    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1    60 
  153  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1   348 
  165    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1    96 
  169  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1   332 
  385    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1   316 
  393  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1   108 
  405    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1   336 
  409  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1    92 
  417    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1   348 
  425  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1    76 
  453    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1   384 
  457  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1    44 
  473    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1   404 
  481  C UCD032R_G10_BE399200Ta19P036H09P028D071R1_068.ab1    20 
  485    UCD032F_G10_BE399200Ta19P036H09P028D071F1_068.ab1   416 
Contig length: old 571, new 571

Contig length: old 571, new 571
New start: 0