No. words: 987; after pruning: 961


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.0 (1,1:428)  408  0.23 0.23 0.00  UCD032F_A11_BE399200Ta21P036H09P028D071F1_095.ab1        1   426 (61)  C UCD032R_A11_BE399200Ta21P036H09P028D071R1_095.ab1   (70)   430     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  208 nodes

 106 str. conn. components

Path
    1  C UCD032R_A11_BE399200Ta21P036H09P028D071R1_095.ab1   500 
  113    UCD032F_A11_BE399200Ta21P036H09P028D071F1_095.ab1    42 
  121  C UCD032R_A11_BE399200Ta21P036H09P028D071R1_095.ab1   380 
  133    UCD032F_A11_BE399200Ta21P036H09P028D071F1_095.ab1    62 
  153  C UCD032R_A11_BE399200Ta21P036H09P028D071R1_095.ab1   348 
  173    UCD032F_A11_BE399200Ta21P036H09P028D071F1_095.ab1   102 
  441  C UCD032R_A11_BE399200Ta21P036H09P028D071R1_095.ab1    60 
  449    UCD032F_A11_BE399200Ta21P036H09P028D071F1_095.ab1   378 
Contig length: old 558, new 558

Contig length: old 558, new 558
New start: 0