No. words: 753; after pruning: 727


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.6 -0.6 (1,1:626)   81 11.11 0.00 0.00  UCD034F_F08_BE399200Ta22P028D01P036G091F1_054.ab1      345   470 (0)  C UCD034R_F08_BE399200Ta22P028D01P036G091R1_054.ab1   (0)   283   158 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.6       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  28 nodes

 16 str. conn. components

Path
    1    UCD034F_F08_BE399200Ta22P028D01P036G091F1_054.ab1     1 
  365  C UCD034R_F08_BE399200Ta22P028D01P036G091R1_054.ab1   263 
  420    UCD034F_F08_BE399200Ta22P028D01P036G091F1_054.ab1   420 
  446  C UCD034R_F08_BE399200Ta22P028D01P036G091R1_054.ab1   182 
  454    UCD034F_F08_BE399200Ta22P028D01P036G091F1_054.ab1   454 
  458  C UCD034R_F08_BE399200Ta22P028D01P036G091R1_054.ab1   170 
Contig length: old 627, new 627

Contig length: old 627, new 627
New start: 0 
S Change at: 351; seg lengths: entry 3, contig 3
S Change at: 361; seg lengths: entry 1, contig 1
S Change at: 389; seg lengths: entry 1, contig 1
S Change at: 411; seg lengths: entry 2, contig 2
S Change at: 463; seg lengths: entry 2, contig 2