No. words: 989; after pruning: 963


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 8.2 (1,1:429)  412  0.00 0.23 0.00  UCD032F_B11_BE399200Ta22P036H09P028D071F1_093.ab1        1   427 (62)  C UCD032R_B11_BE399200Ta22P036H09P028D071R1_093.ab1   (69)   431     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  212 nodes

 108 str. conn. components

Path
    1  C UCD032R_B11_BE399200Ta22P036H09P028D071R1_093.ab1   500 
  165    UCD032F_B11_BE399200Ta22P036H09P028D071F1_093.ab1    95 
  169  C UCD032R_B11_BE399200Ta22P036H09P028D071R1_093.ab1   332 
  193    UCD032F_B11_BE399200Ta22P036H09P028D071F1_093.ab1   123 
  197  C UCD032R_B11_BE399200Ta22P036H09P028D071R1_093.ab1   304 
  221    UCD032F_B11_BE399200Ta22P036H09P028D071F1_093.ab1   151 
  437  C UCD032R_B11_BE399200Ta22P036H09P028D071R1_093.ab1    64 
  441    UCD032F_B11_BE399200Ta22P036H09P028D071F1_093.ab1   371 
Contig length: old 559, new 559

Contig length: old 559, new 559
New start: 0