No. words: 988; after pruning: 962


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 5.1 (1,1:429)  402  0.47 0.23 0.23  UCD032F_F08_BE399200Td02P036H09P028D071F1_054.ab1        1   428 (53)  C UCD032R_F08_BE399200Td02P036H09P028D071R1_054.ab1   (77)   430     3 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  204 nodes

 104 str. conn. components

Path
    1  C UCD032R_F08_BE399200Td02P036H09P028D071R1_054.ab1   507 
  134    UCD032F_F08_BE399200Td02P036H09P028D071F1_054.ab1    56 
  138  C UCD032R_F08_BE399200Td02P036H09P028D071R1_054.ab1   370 
  162    UCD032F_F08_BE399200Td02P036H09P028D071F1_054.ab1    84 
  170  C UCD032R_F08_BE399200Td02P036H09P028D071R1_054.ab1   338 
  182    UCD032F_F08_BE399200Td02P036H09P028D071F1_054.ab1   104 
  186  C UCD032R_F08_BE399200Td02P036H09P028D071R1_054.ab1   322 
  446    UCD032F_F08_BE399200Td02P036H09P028D071F1_054.ab1   368 
  450  C UCD032R_F08_BE399200Td02P036H09P028D071R1_054.ab1    58 
  494    UCD032F_F08_BE399200Td02P036H09P028D071F1_054.ab1   416 
Contig length: old 558, new 559

Contig length: old 559, new 559
New start: 0