No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.9 (1,1:432)  417  0.00 0.00 0.23  UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1        1   433 (68)  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1   (70)   432     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1   502 
  126    UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1    56 
  142  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1   361 
  198    UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1   128 
  214  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1   289 
  222    UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1   152 
  234  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1   269 
  242    UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1   172 
  274  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1   229 
  418    UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1   348 
  426  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1    77 
  454    UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1   384 
  458  C UCD032R_E09_BE399200Td09P036H09P028D071R1_071.ab1    45 
  474    UCD032F_E09_BE399200Td09P036H09P028D071F1_071.ab1   404 
Contig length: old 570, new 571

Contig length: old 571, new 571
New start: 0