No. words: 1245; after pruning: 1219


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:465)  450  0.65 0.22 0.00  UCD025F_C11_BE403167LD03P028H06P028H121F1_091.ab1        1   465 (119)  C UCD025R_C11_BE403167LD03P028H06P028H121R1_091.ab1   (195)   466     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD025R_C11_BE403167LD03P028H06P028H121R1_091.ab1   661 
  394    UCD025F_C11_BE403167LD03P028H06P028H121F1_091.ab1   198 
Contig length: old 779, new 780

Contig length: old 780, new 780
New start: 0