No. words: 1235; after pruning: 1209


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.9 (1,1:458)  454  0.00 0.22 0.00  UCD025F_D11_BE403167LD04P028H06P028H121F1_089.ab1        1   459 (125)  C UCD025R_D11_BE403167LD04P028H06P028H121R1_089.ab1   (191)   460     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C UCD025R_D11_BE403167LD04P028H06P028H121R1_089.ab1   651 
  233    UCD025F_D11_BE403167LD04P028H06P028H121F1_089.ab1    41 
  285  C UCD025R_D11_BE403167LD04P028H06P028H121R1_089.ab1   367 
  309    UCD025F_D11_BE403167LD04P028H06P028H121F1_089.ab1   117 
  497  C UCD025R_D11_BE403167LD04P028H06P028H121R1_089.ab1   155 
  501    UCD025F_D11_BE403167LD04P028H06P028H121F1_089.ab1   309 
  505  C UCD025R_D11_BE403167LD04P028H06P028H121R1_089.ab1   147 
  533    UCD025F_D11_BE403167LD04P028H06P028H121F1_089.ab1   341 
Contig length: old 776, new 776

Contig length: old 776, new 776
New start: 0